PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912998.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 305aa    MW: 32466.2 Da    PI: 10.3959
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912998.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.7e-3980172289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....k 89 
                     a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+pai+++tg+++++as+  ++ssss++s+++++      
  XP_010912998.1  80 APRRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPAIIAATGSGTIPASALASSSSSSAVSTPHQTnwtglG 172
                     7899*****************************************************************888555555555544433445553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3285160IPR005333Transcription factor, TCP
PROSITE profilePS5136927.73786140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDPKGYSTVP PEAPKFHREL GRHPEDKREP PTRIGSTTTQ QHQESSSRGG GGDLQIMMMA  60
STVPPTSVTE KEDQQRRQLA PRRSSNKDRH TKVDGRGRRI RMPALCAARI FQLTRELGHK  120
SDGETIQWLL HQAEPAIIAA TGSGTIPASA LASSSSSSAV STPHQTNWTG LGTSTSATGL  180
GRPHHQGLWR TAAASGGFNS GFLQPATSPA PSNIGFQGLE LPGGFSGGMG AMSFLSMLGG  240
PGQQMPGLEL GLSQDASMGG VLNPQVFSQF YQQMRQGRGG EGGQLHHHHQ QPLASLKDNS  300
HESTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912999.10.0PREDICTED: transcription factor TCP20-like
RefseqXP_010912998.10.0PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD56e-61TCP20_ARATH; Transcription factor TCP20
TrEMBLM0S3K71e-82M0S3K7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27500_0014e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-50TCP family protein